PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015880278.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRAS
Protein Properties Length: 193aa    MW: 21004 Da    PI: 6.2979
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015880278.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS49.19.9e-162078191251
            GRAS 191 leeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                     + +L+++p   EalaVn+v++lhrll++++++e+    vL+ +k ++Pk+v+vveqea+hn++
  XP_015880278.1  20 PGMLDIRPadVEALAVNSVFELHRLLARPGAIEK----VLSSIKAMKPKIVTVVEQEASHNGP 78 
                     56899998889***********************....**********************976 PP

2GRAS123.91.8e-3890185280374
            GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +++  +++++lgr+i+nvvaceg er+erhetl +Wr+rl++aGF pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW
  XP_015880278.1  90 SQDLIMSEVYLGRQICNVVACEGPERFERHETLTQWRARLGSAGFDPVHLGSNAFKQASMLLALFAgGDGYRVEENNGCLMLGWHTRPLIATSAW 184
                     5678899999************************************************************************************* PP

            GRAS 374 r 374
                     +
  XP_015880278.1 185 Q 185
                     6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098518.5331164IPR005202Transcription factor GRAS
PfamPF035143.4E-132078IPR005202Transcription factor GRAS
PfamPF035146.4E-3690185IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MGMHVEGSHF IPTVHAWVCP GMLDIRPADV EALAVNSVFE LHRLLARPGA IEKVLSSIKA  60
MKPKIVTVVE QEASHNGPES SSTTGLAPPS QDLIMSEVYL GRQICNVVAC EGPERFERHE  120
TLTQWRARLG SAGFDPVHLG SNAFKQASML LALFAGGDGY RVEENNGCLM LGWHTRPLIA  180
TSAWQLSEST QSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015880278.11e-143PREDICTED: DELLA protein GAI-like
SwissprotQ8S4W73e-88GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A059AEG82e-99A0A059AEG8_EUCGR; Uncharacterized protein
TrEMBLV4ST102e-99V4ST10_9R
STRINGVIT_14s0006g00640.t011e-98(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.19e-84GRAS family protein